No. words: 1536; after pruning: 1510


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.5 (1,1:865)  658  0.30 0.00 0.00  USDA027F_H07_BF474569Td08P035F09P017G091F1_049.ab1      100   769 (0)  C USDA027R_H07_BF474569Td08P035F09P017G091R1_049.ab1   (0)   767    98 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  330 nodes

 167 str. conn. components

Path
    1    USDA027F_H07_BF474569Td08P035F09P017G091F1_049.ab1     1 
  390  C USDA027R_H07_BF474569Td08P035F09P017G091R1_049.ab1   477 
  398    USDA027F_H07_BF474569Td08P035F09P017G091F1_049.ab1   398 
  442  C USDA027R_H07_BF474569Td08P035F09P017G091R1_049.ab1   425 
  450    USDA027F_H07_BF474569Td08P035F09P017G091F1_049.ab1   450 
  470  C USDA027R_H07_BF474569Td08P035F09P017G091R1_049.ab1   397 
  474    USDA027F_H07_BF474569Td08P035F09P017G091F1_049.ab1   474 
  486  C USDA027R_H07_BF474569Td08P035F09P017G091R1_049.ab1   381 
  490    USDA027F_H07_BF474569Td08P035F09P017G091F1_049.ab1   490 
  502  C USDA027R_H07_BF474569Td08P035F09P017G091R1_049.ab1   365 
Contig length: old 866, new 866

Contig length: old 866, new 866
New start: 0