No. words: 1420; after pruning: 1394


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.8 (1,1:731)  667  0.15 0.00 0.00  USDA023F_H07_BF474569Td08P043A11P017G091F1_049.ab1        1   672 (0)  C USDA023R_H07_BF474569Td08P043A11P017G091R1_049.ab1   (16)   732    61 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  334 nodes

 169 str. conn. components

Path
    1  C USDA023R_H07_BF474569Td08P043A11P017G091R1_049.ab1   748 
   20    USDA023F_H07_BF474569Td08P043A11P017G091F1_049.ab1     4 
   28  C USDA023R_H07_BF474569Td08P043A11P017G091R1_049.ab1   721 
   36    USDA023F_H07_BF474569Td08P043A11P017G091F1_049.ab1    20 
   48  C USDA023R_H07_BF474569Td08P043A11P017G091R1_049.ab1   701 
   52    USDA023F_H07_BF474569Td08P043A11P017G091F1_049.ab1    36 
  116  C USDA023R_H07_BF474569Td08P043A11P017G091R1_049.ab1   633 
  120    USDA023F_H07_BF474569Td08P043A11P017G091F1_049.ab1   104 
  264  C USDA023R_H07_BF474569Td08P043A11P017G091R1_049.ab1   485 
  288    USDA023F_H07_BF474569Td08P043A11P017G091F1_049.ab1   272 
  308  C USDA023R_H07_BF474569Td08P043A11P017G091R1_049.ab1   441 
  312    USDA023F_H07_BF474569Td08P043A11P017G091F1_049.ab1   296 
  360  C USDA023R_H07_BF474569Td08P043A11P017G091R1_049.ab1   389 
  400    USDA023F_H07_BF474569Td08P043A11P017G091F1_049.ab1   384 
  408  C USDA023R_H07_BF474569Td08P043A11P017G091R1_049.ab1   341 
  536    USDA023F_H07_BF474569Td08P043A11P017G091F1_049.ab1   520 
  544  C USDA023R_H07_BF474569Td08P043A11P017G091R1_049.ab1   205 
Contig length: old 748, new 748

Contig length: old 748, new 748
New start: 0