No. words: 1808; after pruning: 1767


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 18.8 (1,1:883)  855  0.23 0.23 0.11  USDA027F_A08_BF474569Td09P035F09P017G091F1_064.ab1        1   877 (19)  C USDA027R_A08_BF474569Td09P035F09P017G091R1_064.ab1   (27)   885     8 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  426 nodes

 215 str. conn. components

Path
    1  C USDA027R_A08_BF474569Td09P035F09P017G091R1_064.ab1   912 
   40    USDA027F_A08_BF474569Td09P035F09P017G091F1_064.ab1    12 
  355  C USDA027R_A08_BF474569Td09P035F09P017G091R1_064.ab1   557 
  367    USDA027F_A08_BF474569Td09P035F09P017G091F1_064.ab1   339 
  523  C USDA027R_A08_BF474569Td09P035F09P017G091R1_064.ab1   389 
  563    USDA027F_A08_BF474569Td09P035F09P017G091F1_064.ab1   535 
  591  C USDA027R_A08_BF474569Td09P035F09P017G091R1_064.ab1   321 
  599    USDA027F_A08_BF474569Td09P035F09P017G091F1_064.ab1   571 
  607  C USDA027R_A08_BF474569Td09P035F09P017G091R1_064.ab1   305 
  611    USDA027F_A08_BF474569Td09P035F09P017G091F1_064.ab1   583 
  639  C USDA027R_A08_BF474569Td09P035F09P017G091R1_064.ab1   273 
  882    USDA027F_A08_BF474569Td09P035F09P017G091F1_064.ab1   854 
  886  C USDA027R_A08_BF474569Td09P035F09P017G091R1_064.ab1    26 
  894    USDA027F_A08_BF474569Td09P035F09P017G091F1_064.ab1   866 
Contig length: old 924, new 924

Contig length: old 924, new 923
New start: 0 
D Change at: 37; seg lengths: entry 0, contig 1