No. words: 1498; after pruning: 1458


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.8 (1,1:731)  725  0.27 0.00 0.00  USDA023F_A08_BF474569Td09P043A11P017G091F1_064.ab1        1   732 (14)  C USDA023R_A08_BF474569Td09P043A11P017G091R1_064.ab1   (20)   732     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  362 nodes

 183 str. conn. components

Path
    1  C USDA023R_A08_BF474569Td09P043A11P017G091R1_064.ab1   752 
   28    USDA023F_A08_BF474569Td09P043A11P017G091F1_064.ab1     8 
   52  C USDA023R_A08_BF474569Td09P043A11P017G091R1_064.ab1   701 
   60    USDA023F_A08_BF474569Td09P043A11P017G091F1_064.ab1    40 
   84  C USDA023R_A08_BF474569Td09P043A11P017G091R1_064.ab1   669 
   88    USDA023F_A08_BF474569Td09P043A11P017G091F1_064.ab1    68 
   92  C USDA023R_A08_BF474569Td09P043A11P017G091R1_064.ab1   661 
  104    USDA023F_A08_BF474569Td09P043A11P017G091F1_064.ab1    84 
  112  C USDA023R_A08_BF474569Td09P043A11P017G091R1_064.ab1   641 
  124    USDA023F_A08_BF474569Td09P043A11P017G091F1_064.ab1   104 
  128  C USDA023R_A08_BF474569Td09P043A11P017G091R1_064.ab1   625 
  132    USDA023F_A08_BF474569Td09P043A11P017G091F1_064.ab1   112 
  152  C USDA023R_A08_BF474569Td09P043A11P017G091R1_064.ab1   601 
  168    USDA023F_A08_BF474569Td09P043A11P017G091F1_064.ab1   148 
  204  C USDA023R_A08_BF474569Td09P043A11P017G091R1_064.ab1   549 
  212    USDA023F_A08_BF474569Td09P043A11P017G091F1_064.ab1   192 
  224  C USDA023R_A08_BF474569Td09P043A11P017G091R1_064.ab1   529 
  232    USDA023F_A08_BF474569Td09P043A11P017G091F1_064.ab1   212 
  244  C USDA023R_A08_BF474569Td09P043A11P017G091R1_064.ab1   509 
  272    USDA023F_A08_BF474569Td09P043A11P017G091F1_064.ab1   252 
  276  C USDA023R_A08_BF474569Td09P043A11P017G091R1_064.ab1   477 
  284    USDA023F_A08_BF474569Td09P043A11P017G091F1_064.ab1   264 
  332  C USDA023R_A08_BF474569Td09P043A11P017G091R1_064.ab1   421 
  336    USDA023F_A08_BF474569Td09P043A11P017G091F1_064.ab1   316 
  364  C USDA023R_A08_BF474569Td09P043A11P017G091R1_064.ab1   389 
  524    USDA023F_A08_BF474569Td09P043A11P017G091F1_064.ab1   504 
  528  C USDA023R_A08_BF474569Td09P043A11P017G091R1_064.ab1   225 
  632    USDA023F_A08_BF474569Td09P043A11P017G091F1_064.ab1   612 
  636  C USDA023R_A08_BF474569Td09P043A11P017G091R1_064.ab1   117 
  652    USDA023F_A08_BF474569Td09P043A11P017G091F1_064.ab1   632 
  656  C USDA023R_A08_BF474569Td09P043A11P017G091R1_064.ab1    97 
  728    USDA023F_A08_BF474569Td09P043A11P017G091F1_064.ab1   708 
  732  C USDA023R_A08_BF474569Td09P043A11P017G091R1_064.ab1    21 
  748    USDA023F_A08_BF474569Td09P043A11P017G091F1_064.ab1   728 
Contig length: old 766, new 766

Contig length: old 766, new 766
New start: 0 
S Change at: 605; seg lengths: entry 1, contig 1