No. words: 1532; after pruning: 1506


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.3 (1,1:733)  731  0.00 0.00 0.00  USDA023F_B08_BF474569Td10P043A11P017G091F1_062.ab1        1   734 (44)  C USDA023R_B08_BF474569Td10P043A11P017G091R1_062.ab1   (20)   734     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  368 nodes

 186 str. conn. components

Path
    1  C USDA023R_B08_BF474569Td10P043A11P017G091R1_062.ab1   754 
   24    USDA023F_B08_BF474569Td10P043A11P017G091F1_062.ab1     4 
   72  C USDA023R_B08_BF474569Td10P043A11P017G091R1_062.ab1   683 
   76    USDA023F_B08_BF474569Td10P043A11P017G091F1_062.ab1    56 
  368  C USDA023R_B08_BF474569Td10P043A11P017G091R1_062.ab1   387 
  628    USDA023F_B08_BF474569Td10P043A11P017G091F1_062.ab1   608 
  632  C USDA023R_B08_BF474569Td10P043A11P017G091R1_062.ab1   123 
  744    USDA023F_B08_BF474569Td10P043A11P017G091F1_062.ab1   724 
Contig length: old 798, new 798

Contig length: old 798, new 798
New start: 0