No. words: 1668; after pruning: 1642


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.0 (1,1:947)  715  0.00 0.00 0.00  USDA010F_A09_BF474569Tu01P017G03P017G09F1_079.ab1      111   830 (0)  C USDA010R_A09_BF474569Tu01P017G03P017G09R1_079.ab1   (0)   838   119 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  362 nodes

 183 str. conn. components

Path
    1    USDA010F_A09_BF474569Tu01P017G03P017G09F1_079.ab1     1 
  418  C USDA010R_A09_BF474569Tu01P017G03P017G09R1_079.ab1   531 
  422    USDA010F_A09_BF474569Tu01P017G03P017G09F1_079.ab1   422 
  482  C USDA010R_A09_BF474569Tu01P017G03P017G09R1_079.ab1   467 
  486    USDA010F_A09_BF474569Tu01P017G03P017G09F1_079.ab1   486 
  506  C USDA010R_A09_BF474569Tu01P017G03P017G09R1_079.ab1   443 
  530    USDA010F_A09_BF474569Tu01P017G03P017G09F1_079.ab1   530 
  550  C USDA010R_A09_BF474569Tu01P017G03P017G09R1_079.ab1   399 
  578    USDA010F_A09_BF474569Tu01P017G03P017G09F1_079.ab1   578 
  614  C USDA010R_A09_BF474569Tu01P017G03P017G09R1_079.ab1   335 
  634    USDA010F_A09_BF474569Tu01P017G03P017G09F1_079.ab1   634 
  646  C USDA010R_A09_BF474569Tu01P017G03P017G09R1_079.ab1   303 
  658    USDA010F_A09_BF474569Tu01P017G03P017G09F1_079.ab1   658 
  662  C USDA010R_A09_BF474569Tu01P017G03P017G09R1_079.ab1   287 
Contig length: old 948, new 948

Contig length: old 948, new 948
New start: 0