No. words: 1694; after pruning: 1668


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.8 (1,1:935)  753  0.00 0.00 0.00  USDA010F_B09_BF474569Tu02P017G03P017G09F1_077.ab1       63   820 (0)  C USDA010R_B09_BF474569Tu02P017G03P017G09R1_077.ab1   (0)   874   117 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  380 nodes

 192 str. conn. components

Path
    1    USDA010F_B09_BF474569Tu02P017G03P017G09F1_077.ab1     1 
  358  C USDA010R_B09_BF474569Tu02P017G03P017G09R1_077.ab1   579 
  362    USDA010F_B09_BF474569Tu02P017G03P017G09F1_077.ab1   362 
  442  C USDA010R_B09_BF474569Tu02P017G03P017G09R1_077.ab1   495 
  454    USDA010F_B09_BF474569Tu02P017G03P017G09F1_077.ab1   454 
  474  C USDA010R_B09_BF474569Tu02P017G03P017G09R1_077.ab1   463 
  482    USDA010F_B09_BF474569Tu02P017G03P017G09F1_077.ab1   482 
  494  C USDA010R_B09_BF474569Tu02P017G03P017G09R1_077.ab1   443 
  502    USDA010F_B09_BF474569Tu02P017G03P017G09F1_077.ab1   502 
  518  C USDA010R_B09_BF474569Tu02P017G03P017G09R1_077.ab1   419 
  526    USDA010F_B09_BF474569Tu02P017G03P017G09F1_077.ab1   526 
  554  C USDA010R_B09_BF474569Tu02P017G03P017G09R1_077.ab1   383 
  574    USDA010F_B09_BF474569Tu02P017G03P017G09F1_077.ab1   574 
  578  C USDA010R_B09_BF474569Tu02P017G03P017G09R1_077.ab1   359 
Contig length: old 936, new 936

Contig length: old 936, new 936
New start: 0