No. words: 581; after pruning: 555


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   10    0.0 0.2 (1,1:290)  226  4.49 0.00 0.00  USDA008F_E11_BF4751497At01P017E06P017E12F1_087.ab1       15   281 (21)  C USDA008R_E11_BF4751497At01P017E06P017E12R1_087.ab1   (2)   277    11 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
10       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  108 nodes

 56 str. conn. components

Path
    1    USDA008F_E11_BF4751497At01P017E06P017E12F1_087.ab1     1 
   83  C USDA008R_E11_BF4751497At01P017E06P017E12R1_087.ab1   209 
   87    USDA008F_E11_BF4751497At01P017E06P017E12F1_087.ab1    87 
   99  C USDA008R_E11_BF4751497At01P017E06P017E12R1_087.ab1   193 
  103    USDA008F_E11_BF4751497At01P017E06P017E12F1_087.ab1   103 
  115  C USDA008R_E11_BF4751497At01P017E06P017E12R1_087.ab1   177 
  127    USDA008F_E11_BF4751497At01P017E06P017E12F1_087.ab1   127 
  147  C USDA008R_E11_BF4751497At01P017E06P017E12R1_087.ab1   145 
  187    USDA008F_E11_BF4751497At01P017E06P017E12F1_087.ab1   187 
  212  C USDA008R_E11_BF4751497At01P017E06P017E12R1_087.ab1    80 
  275    USDA008F_E11_BF4751497At01P017E06P017E12F1_087.ab1   275 
Contig length: old 302, new 302

Contig length: old 302, new 302
New start: 0