No. words: 454; after pruning: 428


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.7 -0.7 (1,1:304)  117  4.73 0.68 0.00  USDA008F_A11_BF4751497Tu01P017E06P017E12F1_095.ab1      130   277 (0)  C USDA008R_A11_BF4751497Tu01P017E06P017E12R1_095.ab1   (0)   177    29 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.7       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  50 nodes

 27 str. conn. components

Path
    1    USDA008F_A11_BF4751497Tu01P017E06P017E12F1_095.ab1     1 
  178  C USDA008R_A11_BF4751497Tu01P017E06P017E12R1_095.ab1   129 
  197    USDA008F_A11_BF4751497Tu01P017E06P017E12F1_095.ab1   197 
  201  C USDA008R_A11_BF4751497Tu01P017E06P017E12R1_095.ab1   106 
  235    USDA008F_A11_BF4751497Tu01P017E06P017E12F1_095.ab1   234 
  239  C USDA008R_A11_BF4751497Tu01P017E06P017E12R1_095.ab1    68 
Contig length: old 305, new 306

Contig length: old 306, new 306
New start: 0