No. words: 518; after pruning: 492


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.9 (1,1:212)  200  0.47 0.47 0.00  USDA026F_E02_BF475149Ta13P035A10P017E121F1_008.ab1        1   213 (45)  C USDA026R_E02_BF475149Ta13P035A10P017E121R1_008.ab1   (46)   214     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  102 nodes

 53 str. conn. components

Path
    1  C USDA026R_E02_BF475149Ta13P035A10P017E121R1_008.ab1   260 
   73    USDA026F_E02_BF475149Ta13P035A10P017E121F1_008.ab1    26 
   77  C USDA026R_E02_BF475149Ta13P035A10P017E121R1_008.ab1   184 
   81    USDA026F_E02_BF475149Ta13P035A10P017E121F1_008.ab1    34 
   89  C USDA026R_E02_BF475149Ta13P035A10P017E121R1_008.ab1   172 
   97    USDA026F_E02_BF475149Ta13P035A10P017E121F1_008.ab1    50 
  121  C USDA026R_E02_BF475149Ta13P035A10P017E121R1_008.ab1   140 
  169    USDA026F_E02_BF475149Ta13P035A10P017E121F1_008.ab1   122 
  173  C USDA026R_E02_BF475149Ta13P035A10P017E121R1_008.ab1    88 
  189    USDA026F_E02_BF475149Ta13P035A10P017E121F1_008.ab1   142 
  193  C USDA026R_E02_BF475149Ta13P035A10P017E121R1_008.ab1    68 
  251    USDA026F_E02_BF475149Ta13P035A10P017E121F1_008.ab1   204 
Contig length: old 305, new 305

Contig length: old 305, new 305
New start: 0