No. words: 546; after pruning: 520


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   11    0.0 1.5 (1,1:224)  200  0.00 0.94 0.00  USDA026F_D03_BF475149Ta20P035A10P017E121F1_025.ab1        1   213 (59)  C USDA026R_D03_BF475149Ta20P035A10P017E121R1_025.ab1   (48)   226    12 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
11       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  104 nodes

 54 str. conn. components

Path
    1  C USDA026R_D03_BF475149Ta20P035A10P017E121R1_025.ab1   274 
   75    USDA026F_D03_BF475149Ta20P035A10P017E121F1_025.ab1    25 
   91  C USDA026R_D03_BF475149Ta20P035A10P017E121R1_025.ab1   184 
   99    USDA026F_D03_BF475149Ta20P035A10P017E121F1_025.ab1    49 
  123  C USDA026R_D03_BF475149Ta20P035A10P017E121R1_025.ab1   152 
  191    USDA026F_D03_BF475149Ta20P035A10P017E121F1_025.ab1   141 
  195  C USDA026R_D03_BF475149Ta20P035A10P017E121R1_025.ab1    80 
  255    USDA026F_D03_BF475149Ta20P035A10P017E121F1_025.ab1   205 
Contig length: old 321, new 322

Contig length: old 322, new 322
New start: 0