No. words: 537; after pruning: 511


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 1.2 (1,1:218)  205  0.00 0.47 0.00  USDA026F_E01_BF475149Td05P035A10P017E121F1_007.ab1        1   214 (55)  C USDA026R_E01_BF475149Td05P035A10P017E121R1_007.ab1   (48)   220     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  106 nodes

 55 str. conn. components

Path
    1  C USDA026R_E01_BF475149Td05P035A10P017E121R1_007.ab1   268 
  103    USDA026F_E01_BF475149Td05P035A10P017E121F1_007.ab1    54 
  115  C USDA026R_E01_BF475149Td05P035A10P017E121R1_007.ab1   154 
  159    USDA026F_E01_BF475149Td05P035A10P017E121F1_007.ab1   110 
  167  C USDA026R_E01_BF475149Td05P035A10P017E121R1_007.ab1   102 
  171    USDA026F_E01_BF475149Td05P035A10P017E121F1_007.ab1   122 
  183  C USDA026R_E01_BF475149Td05P035A10P017E121R1_007.ab1    86 
  191    USDA026F_E01_BF475149Td05P035A10P017E121F1_007.ab1   142 
  207  C USDA026R_E01_BF475149Td05P035A10P017E121R1_007.ab1    62 
  219    USDA026F_E01_BF475149Td05P035A10P017E121F1_007.ab1   170 
  227  C USDA026R_E01_BF475149Td05P035A10P017E121R1_007.ab1    42 
  251    USDA026F_E01_BF475149Td05P035A10P017E121F1_007.ab1   202 
Contig length: old 318, new 318

Contig length: old 318, new 318
New start: 0