No. words: 534; after pruning: 508


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 0.5 (1,1:216)  196  0.46 0.46 0.92  USDA026F_G01_BF475149Td07P035A10P017E121F1_003.ab1        1   218 (43)  C USDA026R_G01_BF475149Td07P035A10P017E121R1_003.ab1   (56)   217     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  100 nodes

 52 str. conn. components

Path
    1  C USDA026R_G01_BF475149Td07P035A10P017E121R1_003.ab1   273 
   73    USDA026F_G01_BF475149Td07P035A10P017E121F1_003.ab1    16 
   77  C USDA026R_G01_BF475149Td07P035A10P017E121R1_003.ab1   197 
   81    USDA026F_G01_BF475149Td07P035A10P017E121F1_003.ab1    24 
   89  C USDA026R_G01_BF475149Td07P035A10P017E121R1_003.ab1   185 
   97    USDA026F_G01_BF475149Td07P035A10P017E121F1_003.ab1    40 
  121  C USDA026R_G01_BF475149Td07P035A10P017E121R1_003.ab1   153 
  169    USDA026F_G01_BF475149Td07P035A10P017E121F1_003.ab1   112 
  177  C USDA026R_G01_BF475149Td07P035A10P017E121R1_003.ab1    97 
  189    USDA026F_G01_BF475149Td07P035A10P017E121F1_003.ab1   132 
  193  C USDA026R_G01_BF475149Td07P035A10P017E121R1_003.ab1    81 
  255    USDA026F_G01_BF475149Td07P035A10P017E121F1_003.ab1   198 
Contig length: old 317, new 318

Contig length: old 318, new 318
New start: 0