No. words: 1766; after pruning: 1726


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.3 (1,1:1074)  659  0.29 0.00 0.00  USDA012F_C09_BF478387As01P004D06P004D12F1_075.ab1      188   878 (0)  C USDA012R_C09_BF478387As01P004D06P004D12R1_075.ab1   (0)   888   198 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  344 nodes

 174 str. conn. components

Path
    1    USDA012F_C09_BF478387As01P004D06P004D12F1_075.ab1     1 
  468  C USDA012R_C09_BF478387As01P004D06P004D12R1_075.ab1   608 
  556    USDA012F_C09_BF478387As01P004D06P004D12F1_075.ab1   556 
  584  C USDA012R_C09_BF478387As01P004D06P004D12R1_075.ab1   492 
Contig length: old 1075, new 1075

Contig length: old 1075, new 1075
New start: 0