No. words: 1908; after pruning: 1882


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:1089)  775  0.61 0.00 0.24  USDA012F_E09_BF478387At01P004D06P004D12F1_071.ab1      104   922 (0)  C USDA012R_E09_BF478387At01P004D06P004D12R1_071.ab1   (0)   986   170 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  396 nodes

 200 str. conn. components

Path
    1    USDA012F_E09_BF478387At01P004D06P004D12F1_071.ab1     1 
  555  C USDA012R_E09_BF478387At01P004D06P004D12R1_071.ab1   536 
Contig length: old 1090, new 1090

Contig length: old 1090, new 1090
New start: 0