No. words: 1726; after pruning: 1686


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.1 (1,1:1091)  613  0.16 0.00 0.00  USDA012F_F09_BF478387At02P004D06P004D12F1_069.ab1      206   839 (0)  C USDA012R_F09_BF478387At02P004D06P004D12R1_069.ab1   (0)   887   254 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1    USDA012F_F09_BF478387At02P004D06P004D12F1_069.ab1     1 
  554  C USDA012R_F09_BF478387At02P004D06P004D12R1_069.ab1   539 
Contig length: old 1092, new 1092

Contig length: old 1092, new 1092
New start: 0