No. words: 1522; after pruning: 1482


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:1121)  378  0.25 0.00 0.00  USDA012F_G09_BF478387Ld01P004D06P004D12F1_067.ab1      351   750 (0)  C USDA012R_G09_BF478387Ld01P004D06P004D12R1_067.ab1   (0)   772   373 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1    USDA012F_G09_BF478387Ld01P004D06P004D12F1_067.ab1     1 
  523  C USDA012R_G09_BF478387Ld01P004D06P004D12R1_067.ab1   600 
  527    USDA012F_G09_BF478387Ld01P004D06P004D12F1_067.ab1   527 
  539  C USDA012R_G09_BF478387Ld01P004D06P004D12R1_067.ab1   584 
  547    USDA012F_G09_BF478387Ld01P004D06P004D12F1_067.ab1   547 
  563  C USDA012R_G09_BF478387Ld01P004D06P004D12R1_067.ab1   560 
Contig length: old 1122, new 1122

Contig length: old 1122, new 1122
New start: 0