No. words: 1604; after pruning: 1578


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.6 (1,1:1121)  468  0.21 0.00 0.00  USDA012F_A10_BF478387Ld03P004D06P004D12F1_080.ab1      321   802 (0)  C USDA012R_A10_BF478387Ld03P004D06P004D12R1_080.ab1   (0)   802   321 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1    USDA012F_A10_BF478387Ld03P004D06P004D12F1_080.ab1     1 
  568  C USDA012R_A10_BF478387Ld03P004D06P004D12R1_080.ab1   555 
Contig length: old 1122, new 1122

Contig length: old 1122, new 1122
New start: 0