No. words: 1686; after pruning: 1660


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:1122)  532  0.00 0.18 0.18  USDA012F_C10_BF478387Ld05P004D06P004D12F1_076.ab1      308   870 (0)  C USDA012R_C10_BF478387Ld05P004D06P004D12R1_076.ab1   (0)   816   254 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1    USDA012F_C10_BF478387Ld05P004D06P004D12F1_076.ab1     1 
  623  C USDA012R_C10_BF478387Ld05P004D06P004D12R1_076.ab1   501 
Contig length: old 1123, new 1123

Contig length: old 1123, new 1123
New start: 0