No. words: 1527; after pruning: 1473


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 15.3 (1,1:774)  694  0.28 0.00 0.14  USDA015F_H03_BF478387Sn24P029E02P004D121F1_017.ab1       48   771 (28)  C USDA015R_H03_BF478387Sn24P029E02P004D121R1_017.ab1   (0)   728     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  356 nodes

 180 str. conn. components

Path
    1    USDA015F_H03_BF478387Sn24P029E02P004D121F1_017.ab1     1 
   83  C USDA015R_H03_BF478387Sn24P029E02P004D121R1_017.ab1   693 
   87    USDA015F_H03_BF478387Sn24P029E02P004D121F1_017.ab1    87 
  137  C USDA015R_H03_BF478387Sn24P029E02P004D121R1_017.ab1   639 
  153    USDA015F_H03_BF478387Sn24P029E02P004D121F1_017.ab1   153 
  161  C USDA015R_H03_BF478387Sn24P029E02P004D121R1_017.ab1   615 
  505    USDA015F_H03_BF478387Sn24P029E02P004D121F1_017.ab1   505 
  513  C USDA015R_H03_BF478387Sn24P029E02P004D121R1_017.ab1   263 
  565    USDA015F_H03_BF478387Sn24P029E02P004D121F1_017.ab1   565 
  573  C USDA015R_H03_BF478387Sn24P029E02P004D121R1_017.ab1   203 
  601    USDA015F_H03_BF478387Sn24P029E02P004D121F1_017.ab1   601 
  605  C USDA015R_H03_BF478387Sn24P029E02P004D121R1_017.ab1   171 
  763    USDA015F_H03_BF478387Sn24P029E02P004D121F1_017.ab1   764 
Contig length: old 799, new 798

Contig length: old 798, new 798
New start: 0