No. words: 1558; after pruning: 1504


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 15.6 (1,1:770)  730  0.65 0.00 0.00  USDA015F_C02_BF478387Ta11P029E02P004D121F1_012.ab1        1   767 (10)  C USDA015R_C02_BF478387Ta11P029E02P004D121R1_012.ab1   (10)   771     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  374 nodes

 189 str. conn. components

Path
    1  C USDA015R_C02_BF478387Ta11P029E02P004D121R1_012.ab1   781 
   18    USDA015F_C02_BF478387Ta11P029E02P004D121F1_012.ab1     8 
   30  C USDA015R_C02_BF478387Ta11P029E02P004D121R1_012.ab1   752 
   38    USDA015F_C02_BF478387Ta11P029E02P004D121F1_012.ab1    28 
   76  C USDA015R_C02_BF478387Ta11P029E02P004D121R1_012.ab1   706 
   80    USDA015F_C02_BF478387Ta11P029E02P004D121F1_012.ab1    70 
   88  C USDA015R_C02_BF478387Ta11P029E02P004D121R1_012.ab1   694 
   92    USDA015F_C02_BF478387Ta11P029E02P004D121F1_012.ab1    82 
  148  C USDA015R_C02_BF478387Ta11P029E02P004D121R1_012.ab1   634 
  152    USDA015F_C02_BF478387Ta11P029E02P004D121F1_012.ab1   142 
  164  C USDA015R_C02_BF478387Ta11P029E02P004D121R1_012.ab1   618 
  236    USDA015F_C02_BF478387Ta11P029E02P004D121F1_012.ab1   226 
  272  C USDA015R_C02_BF478387Ta11P029E02P004D121R1_012.ab1   510 
  604    USDA015F_C02_BF478387Ta11P029E02P004D121F1_012.ab1   594 
  612  C USDA015R_C02_BF478387Ta11P029E02P004D121R1_012.ab1   170 
  772    USDA015F_C02_BF478387Ta11P029E02P004D121F1_012.ab1   762 
Contig length: old 787, new 787

Contig length: old 787, new 787
New start: 0