No. words: 1430; after pruning: 1390


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.5 (1,1:748)  643  0.15 0.15 0.00  USDA015F_D02_BF478387Ta12P029E02P004D121F1_010.ab1        1   670 (0)  C USDA015R_D02_BF478387Ta12P029E02P004D121R1_010.ab1   (10)   750    80 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  330 nodes

 167 str. conn. components

Path
    1  C USDA015R_D02_BF478387Ta12P029E02P004D121R1_010.ab1   760 
   18    USDA015F_D02_BF478387Ta12P029E02P004D121F1_010.ab1     8 
   26  C USDA015R_D02_BF478387Ta12P029E02P004D121R1_010.ab1   735 
   37    USDA015F_D02_BF478387Ta12P029E02P004D121F1_010.ab1    26 
   76  C USDA015R_D02_BF478387Ta12P029E02P004D121R1_010.ab1   685 
   80    USDA015F_D02_BF478387Ta12P029E02P004D121F1_010.ab1    69 
  148  C USDA015R_D02_BF478387Ta12P029E02P004D121R1_010.ab1   613 
  156    USDA015F_D02_BF478387Ta12P029E02P004D121F1_010.ab1   145 
  164  C USDA015R_D02_BF478387Ta12P029E02P004D121R1_010.ab1   597 
  172    USDA015F_D02_BF478387Ta12P029E02P004D121F1_010.ab1   161 
  200  C USDA015R_D02_BF478387Ta12P029E02P004D121R1_010.ab1   561 
  228    USDA015F_D02_BF478387Ta12P029E02P004D121F1_010.ab1   217 
  352  C USDA015R_D02_BF478387Ta12P029E02P004D121R1_010.ab1   409 
  420    USDA015F_D02_BF478387Ta12P029E02P004D121F1_010.ab1   409 
  432  C USDA015R_D02_BF478387Ta12P029E02P004D121R1_010.ab1   329 
  624    USDA015F_D02_BF478387Ta12P029E02P004D121F1_010.ab1   613 
  628  C USDA015R_D02_BF478387Ta12P029E02P004D121R1_010.ab1   133 
Contig length: old 760, new 760

Contig length: old 760, new 760
New start: 0