No. words: 1565; after pruning: 1511


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 14.8 (1,1:767)  729  0.26 0.13 0.13  USDA015F_E02_BF478387Ta13P029E02P004D121F1_008.ab1        3   768 (22)  C USDA015R_E02_BF478387Ta13P029E02P004D121R1_008.ab1   (9)   766     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  370 nodes

 187 str. conn. components

Path
    1  C USDA015R_E02_BF478387Ta13P029E02P004D121R1_008.ab1   775 
   17    USDA015F_E02_BF478387Ta13P029E02P004D121F1_008.ab1    10 
   25  C USDA015R_E02_BF478387Ta13P029E02P004D121R1_008.ab1   751 
   37    USDA015F_E02_BF478387Ta13P029E02P004D121F1_008.ab1    29 
   76  C USDA015R_E02_BF478387Ta13P029E02P004D121R1_008.ab1   700 
   80    USDA015F_E02_BF478387Ta13P029E02P004D121F1_008.ab1    72 
  144  C USDA015R_E02_BF478387Ta13P029E02P004D121R1_008.ab1   632 
  152    USDA015F_E02_BF478387Ta13P029E02P004D121F1_008.ab1   144 
  168  C USDA015R_E02_BF478387Ta13P029E02P004D121R1_008.ab1   608 
  232    USDA015F_E02_BF478387Ta13P029E02P004D121F1_008.ab1   224 
  296  C USDA015R_E02_BF478387Ta13P029E02P004D121R1_008.ab1   480 
  420    USDA015F_E02_BF478387Ta13P029E02P004D121F1_008.ab1   412 
  432  C USDA015R_E02_BF478387Ta13P029E02P004D121R1_008.ab1   344 
  564    USDA015F_E02_BF478387Ta13P029E02P004D121F1_008.ab1   556 
  576  C USDA015R_E02_BF478387Ta13P029E02P004D121R1_008.ab1   200 
  608    USDA015F_E02_BF478387Ta13P029E02P004D121F1_008.ab1   600 
  612  C USDA015R_E02_BF478387Ta13P029E02P004D121R1_008.ab1   164 
  632    USDA015F_E02_BF478387Ta13P029E02P004D121F1_008.ab1   624 
  636  C USDA015R_E02_BF478387Ta13P029E02P004D121R1_008.ab1   140 
  672    USDA015F_E02_BF478387Ta13P029E02P004D121F1_008.ab1   664 
  676  C USDA015R_E02_BF478387Ta13P029E02P004D121R1_008.ab1   100 
  723    USDA015F_E02_BF478387Ta13P029E02P004D121F1_008.ab1   715 
  731  C USDA015R_E02_BF478387Ta13P029E02P004D121R1_008.ab1    45 
  759    USDA015F_E02_BF478387Ta13P029E02P004D121F1_008.ab1   751 
Contig length: old 797, new 798

Contig length: old 798, new 798
New start: 0