No. words: 1573; after pruning: 1505


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.3 (1,1:763)  724  0.26 0.13 0.26  USDA015F_H02_BF478387Ta16P029E02P004D121F1_002.ab1        1   765 (34)  C USDA015R_H02_BF478387Ta16P029E02P004D121R1_002.ab1   (10)   764     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  368 nodes

 186 str. conn. components

Path
    1  C USDA015R_H02_BF478387Ta16P029E02P004D121R1_002.ab1   774 
   37    USDA015F_H02_BF478387Ta16P029E02P004D121F1_002.ab1    26 
   76  C USDA015R_H02_BF478387Ta16P029E02P004D121R1_002.ab1   699 
   80    USDA015F_H02_BF478387Ta16P029E02P004D121F1_002.ab1    69 
  164  C USDA015R_H02_BF478387Ta16P029E02P004D121R1_002.ab1   611 
  188    USDA015F_H02_BF478387Ta16P029E02P004D121F1_002.ab1   177 
  228  C USDA015R_H02_BF478387Ta16P029E02P004D121R1_002.ab1   547 
  628    USDA015F_H02_BF478387Ta16P029E02P004D121F1_002.ab1   617 
  636  C USDA015R_H02_BF478387Ta16P029E02P004D121R1_002.ab1   139 
  755    USDA015F_H02_BF478387Ta16P029E02P004D121F1_002.ab1   744 
Contig length: old 809, new 810

Contig length: old 810, new 809
New start: 0 
D Change at: 767; seg lengths: entry 0, contig 1