No. words: 1502; after pruning: 1448


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 15.0 (1,1:774)  683  0.42 0.14 0.00  USDA015F_B03_BF478387Ta18P029E02P004D121F1_029.ab1        3   719 (0)  C USDA015R_B03_BF478387Ta18P029E02P004D121R1_029.ab1   (9)   774    57 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  348 nodes

 176 str. conn. components

Path
    1  C USDA015R_B03_BF478387Ta18P029E02P004D121R1_029.ab1   783 
   17    USDA015F_B03_BF478387Ta18P029E02P004D121F1_029.ab1    10 
   25  C USDA015R_B03_BF478387Ta18P029E02P004D121R1_029.ab1   759 
   37    USDA015F_B03_BF478387Ta18P029E02P004D121F1_029.ab1    29 
   76  C USDA015R_B03_BF478387Ta18P029E02P004D121R1_029.ab1   708 
   80    USDA015F_B03_BF478387Ta18P029E02P004D121F1_029.ab1    72 
  164  C USDA015R_B03_BF478387Ta18P029E02P004D121R1_029.ab1   620 
  172    USDA015F_B03_BF478387Ta18P029E02P004D121F1_029.ab1   164 
  272  C USDA015R_B03_BF478387Ta18P029E02P004D121R1_029.ab1   512 
  276    USDA015F_B03_BF478387Ta18P029E02P004D121F1_029.ab1   268 
  352  C USDA015R_B03_BF478387Ta18P029E02P004D121R1_029.ab1   432 
  608    USDA015F_B03_BF478387Ta18P029E02P004D121F1_029.ab1   600 
  612  C USDA015R_B03_BF478387Ta18P029E02P004D121R1_029.ab1   172 
  624    USDA015F_B03_BF478387Ta18P029E02P004D121F1_029.ab1   616 
  632  C USDA015R_B03_BF478387Ta18P029E02P004D121R1_029.ab1   152 
  636    USDA015F_B03_BF478387Ta18P029E02P004D121F1_029.ab1   628 
  640  C USDA015R_B03_BF478387Ta18P029E02P004D121R1_029.ab1   144 
Contig length: old 783, new 783

Contig length: old 783, new 783
New start: 0