No. words: 1540; after pruning: 1500


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 15.4 (1,1:766)  726  0.39 0.00 0.00  USDA015F_C03_BF478387Ta19P029E02P004D121F1_027.ab1        6   765 (0)  C USDA015R_C03_BF478387Ta19P029E02P004D121R1_027.ab1   (13)   762     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1  C USDA015R_C03_BF478387Ta19P029E02P004D121R1_027.ab1   775 
   17    USDA015F_C03_BF478387Ta19P029E02P004D121F1_027.ab1     9 
   33  C USDA015R_C03_BF478387Ta19P029E02P004D121R1_027.ab1   743 
   37    USDA015F_C03_BF478387Ta19P029E02P004D121F1_027.ab1    29 
  156  C USDA015R_C03_BF478387Ta19P029E02P004D121R1_027.ab1   620 
  220    USDA015F_C03_BF478387Ta19P029E02P004D121F1_027.ab1   212 
  272  C USDA015R_C03_BF478387Ta19P029E02P004D121R1_027.ab1   504 
  292    USDA015F_C03_BF478387Ta19P029E02P004D121F1_027.ab1   284 
  300  C USDA015R_C03_BF478387Ta19P029E02P004D121R1_027.ab1   476 
Contig length: old 775, new 775

Contig length: old 775, new 775
New start: 0