No. words: 1476; after pruning: 1422


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 14.4 (1,1:766)  669  0.29 0.14 0.00  USDA015F_D03_BF478387Ta20P029E02P004D121F1_025.ab1        3   701 (0)  C USDA015R_D03_BF478387Ta20P029E02P004D121R1_025.ab1   (9)   766    67 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  342 nodes

 173 str. conn. components

Path
    1  C USDA015R_D03_BF478387Ta20P029E02P004D121R1_025.ab1   775 
   17    USDA015F_D03_BF478387Ta20P029E02P004D121F1_025.ab1    10 
   25  C USDA015R_D03_BF478387Ta20P029E02P004D121R1_025.ab1   751 
   37    USDA015F_D03_BF478387Ta20P029E02P004D121F1_025.ab1    29 
  200  C USDA015R_D03_BF478387Ta20P029E02P004D121R1_025.ab1   576 
  204    USDA015F_D03_BF478387Ta20P029E02P004D121F1_025.ab1   196 
  288  C USDA015R_D03_BF478387Ta20P029E02P004D121R1_025.ab1   488 
  296    USDA015F_D03_BF478387Ta20P029E02P004D121F1_025.ab1   288 
  352  C USDA015R_D03_BF478387Ta20P029E02P004D121R1_025.ab1   424 
  360    USDA015F_D03_BF478387Ta20P029E02P004D121F1_025.ab1   352 
  368  C USDA015R_D03_BF478387Ta20P029E02P004D121R1_025.ab1   408 
  440    USDA015F_D03_BF478387Ta20P029E02P004D121F1_025.ab1   432 
  452  C USDA015R_D03_BF478387Ta20P029E02P004D121R1_025.ab1   324 
  468    USDA015F_D03_BF478387Ta20P029E02P004D121F1_025.ab1   460 
  476  C USDA015R_D03_BF478387Ta20P029E02P004D121R1_025.ab1   300 
  484    USDA015F_D03_BF478387Ta20P029E02P004D121F1_025.ab1   476 
  496  C USDA015R_D03_BF478387Ta20P029E02P004D121R1_025.ab1   280 
  508    USDA015F_D03_BF478387Ta20P029E02P004D121F1_025.ab1   500 
  512  C USDA015R_D03_BF478387Ta20P029E02P004D121R1_025.ab1   264 
  632    USDA015F_D03_BF478387Ta20P029E02P004D121F1_025.ab1   624 
  636  C USDA015R_D03_BF478387Ta20P029E02P004D121R1_025.ab1   140 
Contig length: old 775, new 775

Contig length: old 775, new 775
New start: 0