No. words: 1318; after pruning: 1292


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:763)  477  0.97 0.39 0.00  USDA015F_E03_BF478387Ta21P029E02P004D121F1_023.ab1        1   516 (0)  C USDA015R_E03_BF478387Ta21P029E02P004D121R1_023.ab1   (37)   765   248 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C USDA015R_E03_BF478387Ta21P029E02P004D121R1_023.ab1   802 
   69    USDA015F_E03_BF478387Ta21P029E02P004D121F1_023.ab1    30 
   97  C USDA015R_E03_BF478387Ta21P029E02P004D121R1_023.ab1   706 
  105    USDA015F_E03_BF478387Ta21P029E02P004D121F1_023.ab1    66 
  113  C USDA015R_E03_BF478387Ta21P029E02P004D121R1_023.ab1   690 
  121    USDA015F_E03_BF478387Ta21P029E02P004D121F1_023.ab1    82 
  165  C USDA015R_E03_BF478387Ta21P029E02P004D121R1_023.ab1   638 
  181    USDA015F_E03_BF478387Ta21P029E02P004D121F1_023.ab1   142 
  193  C USDA015R_E03_BF478387Ta21P029E02P004D121R1_023.ab1   610 
Contig length: old 802, new 802

Contig length: old 802, new 802
New start: 0