No. words: 1501; after pruning: 1447


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 14.4 (1,1:769)  688  0.42 0.14 0.00  USDA015F_G03_BF478387Ta23P029E02P004D121F1_019.ab1        5   725 (0)  C USDA015R_G03_BF478387Ta23P029E02P004D121R1_019.ab1   (9)   767    46 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C USDA015R_G03_BF478387Ta23P029E02P004D121R1_019.ab1   776 
   17    USDA015F_G03_BF478387Ta23P029E02P004D121F1_019.ab1    12 
   25  C USDA015R_G03_BF478387Ta23P029E02P004D121R1_019.ab1   752 
   37    USDA015F_G03_BF478387Ta23P029E02P004D121F1_019.ab1    31 
   76  C USDA015R_G03_BF478387Ta23P029E02P004D121R1_019.ab1   701 
   80    USDA015F_G03_BF478387Ta23P029E02P004D121F1_019.ab1    74 
  148  C USDA015R_G03_BF478387Ta23P029E02P004D121R1_019.ab1   629 
  152    USDA015F_G03_BF478387Ta23P029E02P004D121F1_019.ab1   146 
  164  C USDA015R_G03_BF478387Ta23P029E02P004D121R1_019.ab1   613 
  252    USDA015F_G03_BF478387Ta23P029E02P004D121F1_019.ab1   246 
  272  C USDA015R_G03_BF478387Ta23P029E02P004D121R1_019.ab1   505 
  630    USDA015F_G03_BF478387Ta23P029E02P004D121F1_019.ab1   624 
  634  C USDA015R_G03_BF478387Ta23P029E02P004D121R1_019.ab1   143 
Contig length: old 776, new 776

Contig length: old 776, new 776
New start: 0