No. words: 1544; after pruning: 1490


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 14.2 (1,1:763)  707  0.79 0.13 0.26  USDA015F_A01_BF478387Td01P029E02P004D121F1_015.ab1        4   765 (5)  C USDA015R_A01_BF478387Td01P029E02P004D121R1_015.ab1   (13)   761     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  360 nodes

 182 str. conn. components

Path
    1  C USDA015R_A01_BF478387Td01P029E02P004D121R1_015.ab1   774 
   37    USDA015F_A01_BF478387Td01P029E02P004D121F1_015.ab1    26 
   76  C USDA015R_A01_BF478387Td01P029E02P004D121R1_015.ab1   699 
   80    USDA015F_A01_BF478387Td01P029E02P004D121F1_015.ab1    69 
  144  C USDA015R_A01_BF478387Td01P029E02P004D121R1_015.ab1   631 
  152    USDA015F_A01_BF478387Td01P029E02P004D121F1_015.ab1   141 
  164  C USDA015R_A01_BF478387Td01P029E02P004D121R1_015.ab1   611 
  172    USDA015F_A01_BF478387Td01P029E02P004D121F1_015.ab1   161 
  192  C USDA015R_A01_BF478387Td01P029E02P004D121R1_015.ab1   583 
  220    USDA015F_A01_BF478387Td01P029E02P004D121F1_015.ab1   209 
  268  C USDA015R_A01_BF478387Td01P029E02P004D121R1_015.ab1   507 
  284    USDA015F_A01_BF478387Td01P029E02P004D121F1_015.ab1   273 
  292  C USDA015R_A01_BF478387Td01P029E02P004D121R1_015.ab1   483 
  636    USDA015F_A01_BF478387Td01P029E02P004D121F1_015.ab1   625 
  640  C USDA015R_A01_BF478387Td01P029E02P004D121R1_015.ab1   135 
  680    USDA015F_A01_BF478387Td01P029E02P004D121F1_015.ab1   669 
  684  C USDA015R_A01_BF478387Td01P029E02P004D121R1_015.ab1    91 
  755    USDA015F_A01_BF478387Td01P029E02P004D121F1_015.ab1   744 
Contig length: old 780, new 781

Contig length: old 781, new 781
New start: 0