No. words: 1556; after pruning: 1488


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 16.5 (1,1:768)  735  0.52 0.00 0.00  USDA015F_B01_BF478387Td02P029E02P004D121F1_013.ab1        3   769 (11)  C USDA015R_B01_BF478387Td02P029E02P004D121R1_013.ab1   (9)   767     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  374 nodes

 189 str. conn. components

Path
    1  C USDA015R_B01_BF478387Td02P029E02P004D121R1_013.ab1   776 
   17    USDA015F_B01_BF478387Td02P029E02P004D121F1_013.ab1    10 
   33  C USDA015R_B01_BF478387Td02P029E02P004D121R1_013.ab1   744 
   41    USDA015F_B01_BF478387Td02P029E02P004D121F1_013.ab1    34 
   56  C USDA015R_B01_BF478387Td02P029E02P004D121R1_013.ab1   721 
   60    USDA015F_B01_BF478387Td02P029E02P004D121F1_013.ab1    53 
   72  C USDA015R_B01_BF478387Td02P029E02P004D121R1_013.ab1   705 
   76    USDA015F_B01_BF478387Td02P029E02P004D121F1_013.ab1    69 
   88  C USDA015R_B01_BF478387Td02P029E02P004D121R1_013.ab1   689 
   92    USDA015F_B01_BF478387Td02P029E02P004D121F1_013.ab1    85 
  164  C USDA015R_B01_BF478387Td02P029E02P004D121R1_013.ab1   613 
  168    USDA015F_B01_BF478387Td02P029E02P004D121F1_013.ab1   161 
  282  C USDA015R_B01_BF478387Td02P029E02P004D121R1_013.ab1   495 
  290    USDA015F_B01_BF478387Td02P029E02P004D121F1_013.ab1   283 
  354  C USDA015R_B01_BF478387Td02P029E02P004D121R1_013.ab1   423 
  358    USDA015F_B01_BF478387Td02P029E02P004D121F1_013.ab1   351 
  378  C USDA015R_B01_BF478387Td02P029E02P004D121R1_013.ab1   399 
  510    USDA015F_B01_BF478387Td02P029E02P004D121F1_013.ab1   503 
  514  C USDA015R_B01_BF478387Td02P029E02P004D121R1_013.ab1   263 
  562    USDA015F_B01_BF478387Td02P029E02P004D121F1_013.ab1   555 
  570  C USDA015R_B01_BF478387Td02P029E02P004D121R1_013.ab1   207 
  602    USDA015F_B01_BF478387Td02P029E02P004D121F1_013.ab1   595 
  618  C USDA015R_B01_BF478387Td02P029E02P004D121R1_013.ab1   159 
  771    USDA015F_B01_BF478387Td02P029E02P004D121F1_013.ab1   764 
Contig length: old 787, new 787

Contig length: old 787, new 787
New start: 0