No. words: 1493; after pruning: 1467


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:766)  681  0.28 0.14 0.00  USDA015F_E01_BF478387Td05P029E02P004D121F1_007.ab1        2   717 (0)  C USDA015R_E01_BF478387Td05P029E02P004D121R1_007.ab1   (9)   767    51 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C USDA015R_E01_BF478387Td05P029E02P004D121R1_007.ab1   776 
   17    USDA015F_E01_BF478387Td05P029E02P004D121F1_007.ab1     9 
   21  C USDA015R_E01_BF478387Td05P029E02P004D121R1_007.ab1   756 
   37    USDA015F_E01_BF478387Td05P029E02P004D121F1_007.ab1    28 
   92  C USDA015R_E01_BF478387Td05P029E02P004D121R1_007.ab1   685 
   96    USDA015F_E01_BF478387Td05P029E02P004D121F1_007.ab1    87 
  164  C USDA015R_E01_BF478387Td05P029E02P004D121R1_007.ab1   613 
  172    USDA015F_E01_BF478387Td05P029E02P004D121F1_007.ab1   163 
  200  C USDA015R_E01_BF478387Td05P029E02P004D121R1_007.ab1   577 
  224    USDA015F_E01_BF478387Td05P029E02P004D121F1_007.ab1   215 
  248  C USDA015R_E01_BF478387Td05P029E02P004D121R1_007.ab1   529 
  252    USDA015F_E01_BF478387Td05P029E02P004D121F1_007.ab1   243 
  272  C USDA015R_E01_BF478387Td05P029E02P004D121R1_007.ab1   505 
  276    USDA015F_E01_BF478387Td05P029E02P004D121F1_007.ab1   267 
  296  C USDA015R_E01_BF478387Td05P029E02P004D121R1_007.ab1   481 
Contig length: old 776, new 776

Contig length: old 776, new 776
New start: 0