No. words: 1583; after pruning: 1543


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 16.1 (1,1:775)  734  0.26 0.00 0.13  USDA015F_F01_BF478387Td06P029E02P004D121F1_005.ab1        3   770 (31)  C USDA015R_F01_BF478387Td06P029E02P004D121R1_005.ab1   (9)   773     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  378 nodes

 191 str. conn. components

Path
    1  C USDA015R_F01_BF478387Td06P029E02P004D121R1_005.ab1   782 
   17    USDA015F_F01_BF478387Td06P029E02P004D121F1_005.ab1    10 
   21  C USDA015R_F01_BF478387Td06P029E02P004D121R1_005.ab1   762 
   25    USDA015F_F01_BF478387Td06P029E02P004D121F1_005.ab1    18 
   33  C USDA015R_F01_BF478387Td06P029E02P004D121R1_005.ab1   750 
   37    USDA015F_F01_BF478387Td06P029E02P004D121F1_005.ab1    30 
  164  C USDA015R_F01_BF478387Td06P029E02P004D121R1_005.ab1   619 
  252    USDA015F_F01_BF478387Td06P029E02P004D121F1_005.ab1   245 
  276  C USDA015R_F01_BF478387Td06P029E02P004D121R1_005.ab1   507 
  292    USDA015F_F01_BF478387Td06P029E02P004D121F1_005.ab1   285 
  376  C USDA015R_F01_BF478387Td06P029E02P004D121R1_005.ab1   407 
  500    USDA015F_F01_BF478387Td06P029E02P004D121F1_005.ab1   493 
  508  C USDA015R_F01_BF478387Td06P029E02P004D121R1_005.ab1   275 
  632    USDA015F_F01_BF478387Td06P029E02P004D121F1_005.ab1   625 
  640  C USDA015R_F01_BF478387Td06P029E02P004D121R1_005.ab1   143 
  769    USDA015F_F01_BF478387Td06P029E02P004D121F1_005.ab1   763 
Contig length: old 807, new 807

Contig length: old 807, new 807
New start: 0