No. words: 1217; after pruning: 1177


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.1 (1,1:878)  306  0.31 0.00 0.00  USDA015F_G04_BF478387Td07P029F02P004D121F1_020.ab1        1   321 (0)  C USDA015R_G04_BF478387Td07P029F02P004D121R1_020.ab1   (17)   879   559 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  158 nodes

 81 str. conn. components

Path
    1  C USDA015R_G04_BF478387Td07P029F02P004D121R1_020.ab1   896 
   21    USDA015F_G04_BF478387Td07P029F02P004D121F1_020.ab1     4 
  288  C USDA015R_G04_BF478387Td07P029F02P004D121R1_020.ab1   609 
Contig length: old 896, new 896

Contig length: old 896, new 896
New start: 0