No. words: 1459; after pruning: 1405


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 14.0 (1,1:753)  661  0.29 0.14 0.00  USDA015F_H01_BF478387Td08P029E02P004D121F1_001.ab1        3   693 (0)  C USDA015R_H01_BF478387Td08P029E02P004D121R1_001.ab1   (13)   753    62 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  338 nodes

 171 str. conn. components

Path
    1  C USDA015R_H01_BF478387Td08P029E02P004D121R1_001.ab1   766 
   41    USDA015F_H01_BF478387Td08P029E02P004D121F1_001.ab1    29 
  404  C USDA015R_H01_BF478387Td08P029E02P004D121R1_001.ab1   363 
  604    USDA015F_H01_BF478387Td08P029E02P004D121F1_001.ab1   592 
  612  C USDA015R_H01_BF478387Td08P029E02P004D121R1_001.ab1   155 
  628    USDA015F_H01_BF478387Td08P029E02P004D121F1_001.ab1   616 
  636  C USDA015R_H01_BF478387Td08P029E02P004D121R1_001.ab1   131 
Contig length: old 766, new 766

Contig length: old 766, new 766
New start: 0