No. words: 768; after pruning: 742


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 0.0 (1,1:653)   79  7.08 0.00 0.00  USDA015F_H04_BF478387Td08P029F02P004D121F1_018.ab1      182   294 (1)  C USDA015R_H04_BF478387Td08P029F02P004D121R1_018.ab1   (0)   473   361 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  42 nodes

 23 str. conn. components

Path
    1    USDA015F_H04_BF478387Td08P029F02P004D121F1_018.ab1     1 
  270  C USDA015R_H04_BF478387Td08P029F02P004D121R1_018.ab1   385 
Contig length: old 654, new 654

Contig length: old 654, new 654
New start: 0