No. words: 1460; after pruning: 1420


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 14.1 (1,1:755)  665  0.14 0.14 0.00  USDA015F_A02_BF478387Td09P029E02P004D121F1_016.ab1        5   698 (0)  C USDA015R_A02_BF478387Td09P029E02P004D121R1_016.ab1   (9)   753    59 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  342 nodes

 173 str. conn. components

Path
    1  C USDA015R_A02_BF478387Td09P029E02P004D121R1_016.ab1   762 
   37    USDA015F_A02_BF478387Td09P029E02P004D121F1_016.ab1    31 
   84  C USDA015R_A02_BF478387Td09P029E02P004D121R1_016.ab1   679 
   92    USDA015F_A02_BF478387Td09P029E02P004D121F1_016.ab1    86 
  148  C USDA015R_A02_BF478387Td09P029E02P004D121R1_016.ab1   615 
  156    USDA015F_A02_BF478387Td09P029E02P004D121F1_016.ab1   150 
  164  C USDA015R_A02_BF478387Td09P029E02P004D121R1_016.ab1   599 
  220    USDA015F_A02_BF478387Td09P029E02P004D121F1_016.ab1   214 
  224  C USDA015R_A02_BF478387Td09P029E02P004D121R1_016.ab1   539 
Contig length: old 762, new 762

Contig length: old 762, new 762
New start: 0