No. words: 1833; after pruning: 1779


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.3 (1,1:977)  826  0.47 0.00 0.00  USDA012F_B09_BF478387Tu02P004D06P004D12F1_077.ab1       93   947 (0)  C USDA012R_B09_BF478387Tu02P004D06P004D12R1_077.ab1   (0)   886    32 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  416 nodes

 210 str. conn. components

Path
    1    USDA012F_B09_BF478387Tu02P004D06P004D12F1_077.ab1     1 
  590  C USDA012R_B09_BF478387Tu02P004D06P004D12R1_077.ab1   389 
Contig length: old 978, new 978

Contig length: old 978, new 978
New start: 0