No. words: 742; after pruning: 716


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.9 (1,1:318)  310  0.00 0.31 0.31  USDA005R3_F11_BF485305At02P004H02H08R3_085.ab1        1   319 (61)  C USDA005F3_F11_BF485305At02P004H02H08F3_085.ab1   (43)   319     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  154 nodes

 79 str. conn. components

Path
    1  C USDA005F3_F11_BF485305At02P004H02H08F3_085.ab1   362 
  211    USDA005R3_F11_BF485305At02P004H02H08R3_085.ab1   167 
  271  C USDA005F3_F11_BF485305At02P004H02H08F3_085.ab1    92 
  295    USDA005R3_F11_BF485305At02P004H02H08R3_085.ab1   251 
Contig length: old 423, new 424

Contig length: old 424, new 424
New start: 0