No. words: 872; after pruning: 846


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 4.0 (1,1:323)  310  0.31 0.00 0.62  USDA005R3_B12_BF485305Ld04P004H02H08R3_094.ab1        1   323 (64)  C USDA005F3_B12_BF485305Ld04P004H02H08F3_094.ab1   (162)   323     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  154 nodes

 79 str. conn. components

Path
    1  C USDA005F3_B12_BF485305Ld04P004H02H08F3_094.ab1   485 
  274    USDA005R3_B12_BF485305Ld04P004H02H08R3_094.ab1   112 
  354  C USDA005F3_B12_BF485305Ld04P004H02H08F3_094.ab1   132 
  410    USDA005R3_B12_BF485305Ld04P004H02H08R3_094.ab1   248 
  414  C USDA005F3_B12_BF485305Ld04P004H02H08F3_094.ab1    72 
  422    USDA005R3_B12_BF485305Ld04P004H02H08R3_094.ab1   260 
  447  C USDA005F3_B12_BF485305Ld04P004H02H08F3_094.ab1    39 
  451    USDA005R3_B12_BF485305Ld04P004H02H08R3_094.ab1   289 
  455  C USDA005F3_B12_BF485305Ld04P004H02H08F3_094.ab1    31 
  459    USDA005R3_B12_BF485305Ld04P004H02H08R3_094.ab1   297 
Contig length: old 548, new 549

Contig length: old 549, new 549
New start: 0