No. words: 1256; after pruning: 1230


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.3 (1,1:1008)  226  1.21 0.00 0.00  USDA008F_C03_BG263233As01P017D02P017D08F1_027.ab1      334   580 (0)  C USDA008R_C03_BG263233As01P017D02P017D08R1_027.ab1   (0)   676   430 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  114 nodes

 59 str. conn. components

Path
    1    USDA008F_C03_BG263233As01P017D02P017D08F1_027.ab1     1 
  484  C USDA008R_C03_BG263233As01P017D02P017D08R1_027.ab1   526 
  496    USDA008F_C03_BG263233As01P017D02P017D08F1_027.ab1   496 
  508  C USDA008R_C03_BG263233As01P017D02P017D08R1_027.ab1   502 
  512    USDA008F_C03_BG263233As01P017D02P017D08F1_027.ab1   512 
  524  C USDA008R_C03_BG263233As01P017D02P017D08R1_027.ab1   486 
  532    USDA008F_C03_BG263233As01P017D02P017D08F1_027.ab1   532 
  536  C USDA008R_C03_BG263233As01P017D02P017D08R1_027.ab1   474 
Contig length: old 1009, new 1009

Contig length: old 1009, new 1009
New start: 0