No. words: 1559; after pruning: 1533


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.1 (1,1:1026)  502  0.75 0.00 0.00  USDA008F_E03_BG263233At01P017D02P017D08F1_023.ab1      253   784 (0)  C USDA008R_E03_BG263233At01P017D02P017D08R1_023.ab1   (0)   775   244 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1    USDA008F_E03_BG263233At01P017D02P017D08F1_023.ab1     1 
  603  C USDA008R_E03_BG263233At01P017D02P017D08R1_023.ab1   425 
  611    USDA008F_E03_BG263233At01P017D02P017D08F1_023.ab1   611 
  627  C USDA008R_E03_BG263233At01P017D02P017D08R1_023.ab1   401 
  635    USDA008F_E03_BG263233At01P017D02P017D08F1_023.ab1   635 
  639  C USDA008R_E03_BG263233At01P017D02P017D08R1_023.ab1   389 
Contig length: old 1027, new 1027

Contig length: old 1027, new 1027
New start: 0