No. words: 1281; after pruning: 1255


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:481)  469  0.00 0.42 0.00  USDA005R3_H01_BG263358Ld02P004A03A09R3_001.ab1        1   481 (147)  C USDA005F3_H01_BG263358Ld02P004A03A09F3_001.ab1   (170)   483     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C USDA005F3_H01_BG263358Ld02P004A03A09F3_001.ab1   653 
  504    USDA005R3_H01_BG263358Ld02P004A03A09R3_001.ab1   332 
  552  C USDA005F3_H01_BG263358Ld02P004A03A09F3_001.ab1   102 
  560    USDA005R3_H01_BG263358Ld02P004A03A09R3_001.ab1   388 
Contig length: old 799, new 800

Contig length: old 800, new 800
New start: 0