No. words: 1291; after pruning: 1265


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.9 (1,1:490)  475  0.00 0.20 0.20  USDA005R3_C02_BG263358Ld05P004A03A09R3_012.ab1        1   490 (140)  C USDA005F3_C02_BG263358Ld05P004A03A09F3_012.ab1   (170)   491     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C USDA005F3_C02_BG263358Ld05P004A03A09F3_012.ab1   661 
  376    USDA005R3_C02_BG263358Ld05P004A03A09R3_012.ab1   205 
  448  C USDA005F3_C02_BG263358Ld05P004A03A09F3_012.ab1   214 
  464    USDA005R3_C02_BG263358Ld05P004A03A09R3_012.ab1   293 
  596  C USDA005F3_C02_BG263358Ld05P004A03A09F3_012.ab1    66 
  604    USDA005R3_C02_BG263358Ld05P004A03A09R3_012.ab1   433 
Contig length: old 800, new 801

Contig length: old 801, new 801
New start: 0