No. words: 1278; after pruning: 1252


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (1,1:480)  463  0.21 0.21 0.21  USDA005R3_D02_BG263358Ld06P004A03A09R3_010.ab1        1   481 (146)  C USDA005F3_D02_BG263358Ld06P004A03A09F3_010.ab1   (170)   481     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C USDA005F3_D02_BG263358Ld06P004A03A09F3_010.ab1   651 
  503    USDA005R3_D02_BG263358Ld06P004A03A09R3_010.ab1   332 
Contig length: old 797, new 798

Contig length: old 798, new 798
New start: 0