No. words: 1298; after pruning: 1272


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.6 (1,1:500)  474  0.00 0.40 0.60  USDA005R3_E02_BG263358Ld07P004A03A09R3_008.ab1        1   503 (132)  C USDA005F3_E02_BG263358Ld07P004A03A09F3_008.ab1   (161)   502     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C USDA005F3_E02_BG263358Ld07P004A03A09F3_008.ab1   663 
  499    USDA005R3_E02_BG263358Ld07P004A03A09R3_008.ab1   336 
Contig length: old 797, new 798

Contig length: old 798, new 798
New start: 0