No. words: 1298; after pruning: 1272


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.6 (1,1:488)  460  0.62 0.41 0.21  USDA005R3_H02_BG263358Ld10P004A03A09R3_002.ab1        1   487 (139)  C USDA005F3_H02_BG263358Ld10P004A03A09F3_002.ab1   (182)   490     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C USDA005F3_H02_BG263358Ld10P004A03A09F3_002.ab1   672 
  517    USDA005R3_H02_BG263358Ld10P004A03A09R3_002.ab1   333 
  601  C USDA005F3_H02_BG263358Ld10P004A03A09F3_002.ab1    72 
  609    USDA005R3_H02_BG263358Ld10P004A03A09R3_002.ab1   425 
Contig length: old 809, new 810

Contig length: old 810, new 810
New start: 0