No. words: 1054; after pruning: 1028


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 7.9 (1,1:488)  472  0.00 0.21 0.21  USDA005R3_B01_BG263358Tu02P004A03A09R3_013.ab1        1   487 (37)  C USDA005F3_B01_BG263358Tu02P004A03A09F3_013.ab1   (41)   489     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C USDA005F3_B01_BG263358Tu02P004A03A09F3_013.ab1   530 
   81    USDA005R3_B01_BG263358Tu02P004A03A09R3_013.ab1    39 
   97  C USDA005F3_B01_BG263358Tu02P004A03A09F3_013.ab1   434 
  109    USDA005R3_B01_BG263358Tu02P004A03A09R3_013.ab1    67 
  117  C USDA005F3_B01_BG263358Tu02P004A03A09F3_013.ab1   414 
  125    USDA005R3_B01_BG263358Tu02P004A03A09R3_013.ab1    83 
  129  C USDA005F3_B01_BG263358Tu02P004A03A09F3_013.ab1   402 
  133    USDA005R3_B01_BG263358Tu02P004A03A09R3_013.ab1    91 
  149  C USDA005F3_B01_BG263358Tu02P004A03A09F3_013.ab1   382 
  153    USDA005R3_B01_BG263358Tu02P004A03A09R3_013.ab1   111 
  161  C USDA005F3_B01_BG263358Tu02P004A03A09F3_013.ab1   370 
  169    USDA005R3_B01_BG263358Tu02P004A03A09R3_013.ab1   127 
  233  C USDA005F3_B01_BG263358Tu02P004A03A09F3_013.ab1   298 
  241    USDA005R3_B01_BG263358Tu02P004A03A09R3_013.ab1   199 
  293  C USDA005F3_B01_BG263358Tu02P004A03A09F3_013.ab1   238 
  301    USDA005R3_B01_BG263358Tu02P004A03A09R3_013.ab1   259 
Contig length: old 565, new 566

Contig length: old 566, new 566
New start: 0