No. words: 893; after pruning: 867


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 5.7 (1,1:280)  264  0.36 0.36 0.00  USDA008F_C10_BG313767Ld05P017E02P017E08F1_076.ab1        3   281 (182)  C USDA008R_C10_BG313767Ld05P017E02P017E08R1_076.ab1   (150)   280     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  134 nodes

 69 str. conn. components

Path
    1  C USDA008R_C10_BG313767Ld05P017E02P017E08R1_076.ab1   430 
  202    USDA008F_C10_BG313767Ld05P017E02P017E08F1_076.ab1    53 
  210  C USDA008R_C10_BG313767Ld05P017E02P017E08R1_076.ab1   221 
  214    USDA008F_C10_BG313767Ld05P017E02P017E08F1_076.ab1    65 
  242  C USDA008R_C10_BG313767Ld05P017E02P017E08R1_076.ab1   189 
  246    USDA008F_C10_BG313767Ld05P017E02P017E08F1_076.ab1    97 
  270  C USDA008R_C10_BG313767Ld05P017E02P017E08R1_076.ab1   161 
  274    USDA008F_C10_BG313767Ld05P017E02P017E08F1_076.ab1   125 
Contig length: old 612, new 612

Contig length: old 612, new 612
New start: 0