No. words: 866; after pruning: 840


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.7 (1,1:261)  244  0.77 0.38 0.00  USDA008F_D10_BG313767Ld06P017E02P017E08F1_074.ab1        2   262 (163)  C USDA008R_D10_BG313767Ld06P017E02P017E08R1_074.ab1   (179)   262     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  126 nodes

 65 str. conn. components

Path
    1  C USDA008R_D10_BG313767Ld06P017E02P017E08R1_074.ab1   441 
  203    USDA008F_D10_BG313767Ld06P017E02P017E08F1_074.ab1    24 
  215  C USDA008R_D10_BG313767Ld06P017E02P017E08R1_074.ab1   227 
  239    USDA008F_D10_BG313767Ld06P017E02P017E08F1_074.ab1    60 
  279  C USDA008R_D10_BG313767Ld06P017E02P017E08R1_074.ab1   163 
  287    USDA008F_D10_BG313767Ld06P017E02P017E08F1_074.ab1   108 
  291  C USDA008R_D10_BG313767Ld06P017E02P017E08R1_074.ab1   151 
  295    USDA008F_D10_BG313767Ld06P017E02P017E08F1_074.ab1   116 
Contig length: old 604, new 604

Contig length: old 604, new 604
New start: 0